Changelog

[1.4.0] - 2024-03-21

Features

Move binnedpointlist to ExtendableGrids
New grid glueing algorithm using BinnedPointList
Fix docs, test
Merge pull request #42 from j-fu/mvbinned

Move binned pointlist over here and use it for glueing

Update! function to trigger reinstantioation of grid components; instantiate of Volumes components and FaceNormals and EdgeTangents keep existing arrays.
Merge pull request #41 from chmerdon/master

Reinstantiation of CellVolumes, FaceNormals etc.

[1.3.2] - 2024-03-08

Features

Fix documentation, all docstrings in output
Update ci for apple silicon
Add docstrings for commongrids
Add Aqua.jl tests
SimplexGridFactory isn't differently licensed
Bump patch version

[1.3.1] - 2024-02-20

Features

Fix subgrid coordinate system for boundary grids (#38)
fix subgrid coordinate system for boundary grids
use ExampleJuggler v2 (no Pluto dependency due to extensions)

[1.3.0] - 2024-02-05

Features

Merge branch 'master' of https://github.com/chmerdon/ExtendableGrids.jl
New grid components ParentGridRelation, FaceParents, CellParents, BFaceParents,

some of them are now directly set during subgrid or refinement routines (todo: set BFaceParents also in refinements)

Small fix
Small fix
Added BFaceParents to all refinement routines and some tests
Renamed NodeInParent to NodeParents, added a deprecated warning on this
New grid components ParentGridRelation, FaceParents, CellParents, BFaceParents,

some of them are now directly set during subgrid or refinement routines (todo: set BFaceParents also in refinements)

Small fix
Small fix
Added BFaceParents to all refinement routines and some tests
Renamed NodeInParent to NodeParents, added a deprecated warning on this
Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl

[1.2.3] - 2024-01-19

Features

Fix for subgrid in case there is empty boundary data in the parent grid (or probably also when the subgrid lies completely in the interior)
Modified the subgrid+extrusion test a bit to test if a subgrid for a completely interior region works (and it only does with the previous modifications)
Fix for subgrid in case there is empty boundary data (#36)
fix for subgrid in case there is empty boundary data in the parent grid (or probably also when the subgrid lies completely in the interior)
modified the subgrid+extrusion test a bit to test if a subgrid for a completely interior region works (and it only does with the previous modifications)
Bump patch version

[1.2.2] - 2023-11-29

Features

Add more gmsh stuff
handle geo files
allow for simplexgrid("my.msh") and simplexgrid("my.geo")
allow for `write("my.msh",grid)
file handling with gmsh initializes and finalizes
Bump version

[1.2.1] - 2023-11-28

Features

Bugfixes for gmsh extension
handle node tags properly
add more examples from gmsh docs

[1.2.0] - 2023-11-23

Features

Gmsh extension3 (#34)
Update ExtendableGridsGmshExt.jl
Add the seal function

Computes the boundary faces of an incomplete simplexgrid and adds them to it

simplexgrid + mixedgrid functions for the gmsh extension are defined
add tests with different types (of indices & coordinates) for gmsh Y ExtendableGrids
add gmsh geometry description test
Document the gmsh stuff

Co-authored-by: Jürgen Fuhrmann <juergen-fuhrmann@web.de>

Use ExampleJuggler (#35)
moved tests to examplejuggler
move documentation to examplejuggler
Add gmsh example
Small readme+docs update
Add J. Taraz to author lists

[1.1.0] - 2023-07-25

Features

Update Project.toml

change Project.toml to incorporate the extension

Create ExtendableGridsGmshExt.jl
Update ExtendableGridsGmshExt.jl

upload the (gmsh-) extension code

Update simplexgrid.jl

include function definitions with implementations in the gmsh extension

Gmsh-files for tests
(g)msh-files for the test of the extension
Delete sto_2d.msh
Delete sto_3d.msh
Update runtests.jl

added the tests of the gmsh extension

Update Project.toml

add dependencies for the gmsh extension

Update Project.toml
Update runtests.jl
Merge pull request #32 from jotaraz/master

gmsh ext

Add requires for 1.6
Remove assignment to gms.model for Julia <1.9
Remove dummy simplexgrid(module)
Bump version
Merge pull request #33 from j-fu/gmsh-extension2

add requires for 1.6

[1.0.0] - 2023-07-22

Features

GeometryGroups (#27)
new type CellGeometryGroups that collect all cells of same CellGeometry as ordered in UniqueCellGeometries
view for VariableTargetAdjacency, less allocation in FaceNodes for mixed geometries

Co-authored-by: Christian Merdon <merdon@wias-berlin.de>

Allow non-leaf types in ElementGeometries
New type CellGeometryGroups that collect all cells of same CellGeometry as ordered in UniqueCellGeometries
Added also FaceGeometryGroups etc. and assembly helpers
Init BEdgeRegions with an array, so that test for bedgemask works again
GeometryGroups > AssemblyGroups
Some small corrections, view for VariableTargetAdjacency, less allocation in FaceNodes for mixed geometries
Some small improvements
Merge pull request #31 from j-fu/geometry_groups

some small changes

Merge branch 'master' into quadmeshes
Merge pull request #30 from j-fu/quadmeshes

Prepare for quadrilateral and cuboidal elements

Set cairomakie invisible in tests
Set version to 1.0 for better semver

[0.9.17] - 2023-02-10

Features

Fix print_tree calls
Sorting coordinates of 1D subgrids
Use CairoMakie for plotting tests & docs
Merge pull request #22 from j-fu/sort1dsubgrids

Sort 1d subgrids

[0.9.16] - 2022-11-30

Features

Remove allocation regression in Julia 1.9 - return Matrices as local_celledgenodes etc. instead of adjoints

[0.9.15] - 2022-10-22

Features

Cleanup type handling for simplexgrid constructors, 0.9.15
Fixes stackoverflow error when calling simplexgrid with arrays of different index types
Detect index types from CellNode arrays
replace collectorassign by convert
add bregions, cellregion constructor to tensor grid constructor
Version bump
Fix CI for 1.6
Fix CI for 1.6 - again

[0.9.14] - 2022-10-19

Features

BFaceRegions in grid after uniform_refine are still VectorOfConstants if BFaceRegions in source grid has been VectorOfConstants
Introduce barrier in volume calculation (#19)

Bump version

[0.9.13] - 2022-09-13

Features

Fix unit test for writevtk
Create Invalidations.yml (#16)
Create Invalidations.yml

This is based on https://github.com/julia-actions/julia-invalidations. Adding such checks came up in https://discourse.julialang.org/t/potential-performance-regressions-in-julia-1-8-for-special-un-precompiled-type-dispatches-and-how-to-fix-them/86359. I suggest to add this check here since this package is widely used as a dependency.

See also SciML/MuladdMacro.jl#26 and SciML/MuladdMacro.jl#29

Missing bracket (#18)

Bump version, allow AbstractTrees 0.4

[0.9.12] - 2022-06-23

Features

Piecewise linear interpolation between simplexgrids

[0.9.11] - 2022-06-21

Features

Speed up of hot loops in bfacemask! and cellmask!

[0.9.10] - 2022-06-16

Features

Bregion numbers can now be functions of the current region, or zero to erase

[0.9.9] - 2022-06-16

Features

Bugfix for 3D rect!

[0.9.8] - 2022-06-15

Features

Bump to 0.9.8 - missed some commits

[0.9.7] - 2022-06-15

Features

Fix superfluous corner triangles in subgrid generation
Added rect! to regionedit - place surface info into rectangular grid

[0.9.6] - 2022-05-13

Features

Added barycentric refinement for Tetrahedron3D and some tests for uniform and barycentric refinement

[0.9.5] - 2022-03-27

Features

Improve glue performance
allow to restrict tested regions
removed allocations in main loop

[0.9.4] - 2022-03-24

Features

Added FaceEdgeSigns, version bump

[0.9.3] - 2022-03-23

Features

Added function for writing grid structure to vtk_write (#12)
Added function for writing grid structure to io.jl

The writing of the VTK files uses the WriteVTK.jl package. Hence, it was added as dependency. In addition to the grid structure, point, cell, or field data can be written to the file.

julia1.6 now required, added test (needs SHA hash comparison to test Project.toml)

Co-authored-by: chmerdon <57663257+chmerdon@users.noreply.github.com>

Update ci.yml

update to new minimum julia version dependency

Update Project.toml

[0.9.2] - 2022-03-22

Features

Fix for node ordering in tensor grid constructor such that no negative cell volumes occur

[0.9.1] - 2022-02-21

Features

Some bugfixes for unionizing update, version bump

[0.9.0] - 2022-02-18

Features

Unionize abstract types (#13)

This relies on the built-in union split of Julia which seems to have no union size constraint anymore. This may remove some allocations...

Use "ElementGeomtries" – union of Geometry leaf types – as eltype for CellGeometries,BFaceGeomtries
Similar with CoordinateSystems.
fixed UniqueBFaceGeometries etc, reduced allocations in ItemVolumes instantiations (dispatch on CoordinateSystem seems to cause remaining allocations)
use SVector for storing intermediate vector data
Added more typestable getindex methods.
use length of cx in cellfinder instead of x as length of x might not match)

Co-authored-by: Christian Merdon <merdon@localhost.localdomain>

Version bump

[0.8.11] - 2021-12-06

Features

Glue and simplexgrid(xygrid, zcoord) now use Cint indices.

[0.8.10] - 2021-11-13

Features

Test against tol for lmismatch in geomspace

[0.8.9] - 2021-11-10

Features

Fix missing CoordinateSystem instantiation for subgrid

[0.8.8] - 2021-11-03

Features

Volume of Vertex0D set to 1
Switch off plotting testset on windows system for now
Version bump

[0.8.7] - 2021-10-21

Features

Added ringsector2d

[0.8.6] - 2021-10-21

Features

Modify 2D x Z tensorproduct API: make cell, bottom and top regions from

offsets of 2D cellregions

Bfacemask! for 3D, introduce allow_new flag

[0.8.5] - 2021-10-20

Features

Tensor product grid2d x coordZ

[0.8.4] - 2021-10-20

Features

Docstring for VoronoiFaceCenters
Add glue method for grids
Removed Base.RefValues from L2GTransformer struct and made it mutable (immutability seems to give no benefit here)
Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl

[0.8.3] - 2021-10-13

Features

Add tests for geomspace, make assertion warnings more clear
Don't use yet X[begin]
Some more geomspace tweaks
Calculate VoronoiFaceCenters, take in tricircumcenter!
Add voronoi.jl

[0.8.2] - 2021-10-07

Features

Start to sort out documentation
Remove plotting test
Less allocations in instantiation of EdgeNodes
Less allocations in instantiation of FaceNormals and EdgeTangents, converted some Float64 to Tc
Some tweaks for geomspace
Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl
Merge branch 'master' of https://github.com/j-fu/ExtendableGrids.jl
Reduced allocations in all mesh refinements, last remnants of GridAdjacencyTypes erased and replaced by Adjacency

[0.8.1] - 2021-10-06

Features

Nnodesforgeometry/nfacesforgeometry/nedgesforgeometry erased/merged into numnodes/numfaces/numedges that are now residing in shapespecs.jl, edges are always Edge1D (adjusted instantiation of EdgeNodes in derived.jl accordingly), erased GridAdjacencyTypes, added enum consistency tests also for Parallelepiped3D
Activated L2GTransfer, AssemblyTypes, CellFinder (moved from GradientRobustMultiPhysics) and respective tests; renamed BFaces to BFaceFaces and BEdges to BEdgeEdges
Version 0.8.1
Ch Merdon as author
Set EdgeGeometries in instantiation of EdgesNodes in 1D and 2D
Merge branch 'master' of https://github.com/j-fu/ExtendableGrids.jl
Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl

[0.8.0] - 2021-10-05

Features

Phase 1 Transfer of gridstuff from GradienRobustMultiPhysics (#11)
Phase 1 Transfer of gridstuff from GradienRobustMultiPhysics
Bump version

[0.7.9] - 2021-07-09

Features

Added boundary edge regions (#10)
Added boundary edge regions
Extended constructor for simplexgrid
Fixed missing assignment of boundary edge node adjacency

Co-authored-by: Matthias Liero <matthias.liero@wias-berlin.de>

Bump version

[0.7.8] - 2021-07-02

Features

Bugfix for BFaceCells, relax parameter types in simplexgrid() constructor

[0.7.7] - 2021-06-15

Features

Type-annotated some methods
Compute adjacency between boundary faces and edges. (#8)
Compute adjacency between boundary faces and edges.
Added missing methods

Co-authored-by: Matthias Liero <matthias.liero@wias-berlin.de>

Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl
Bump patch version

[0.7.6] - 2021-03-31

Features

J fu bfnormals (#7)

Enable outflow bc in VoronoiFVM

Create BFaceNodes, BFaceNormals
sparsematrix <-> adjacency handling
Remove ExtendableSparse as Dependency
Relax some type constraints for simplexgrid
bump version
Oops: remove GridVisiualize from Project.toml

[0.7.5] - 2021-03-30

Features

Bump patch version, Allow for ExtendableSparse 0.4

[0.7.4] - 2021-01-12

Features

Factored out plotting

[0.7.3] - 2021-01-10

Features

Fix typo (colstaert)

change alpha default for surfaces.

[0.7.2] - 2021-01-09

Features

Reorganization: GridVisualize as submodule
Renamed:

GridPlotContext -> GridVisualizer gridplot -> visualize SubPlotContext -> SubVis

More renames for passing test
Bump version

[0.7.1] - 2021-01-09

Features

Gridplot checks with VoronoiFVM
Detailed checks for plotting with VoronoiFVM
Pluto examples in experimental

[0.7.0] - 2021-01-07

Features

Renamed plot->gridplot, use AbstractPlotting >0.15 (#5)

Renamed plot->gridplot, use AbstractPlotting >0.15

[0.6.3] - 2021-01-06

Features

Fix use of extrema in bbox
Color handling via Colors.jl and ColorSchemes.jl
Added rosetta.jl to experimental test examples
Save method for plot context
Lower expectation to coverage
Fix codecov
Fix codecov
Last developments before switching to AbstratPlotting 0.15 (#4)

Color handling via Colors.jl and ColorSchemes.jl In addition:

fix use of extrema in bbox
color handling via Colors.jl and ColorSchemes.jl
added rosetta.jl to experimental test examples
save method for plot context

[0.6.2] - 2021-01-01

Features

Pluto tests, MeshCat (#3)
marching tets et al can directly write into GeometryBasics compatible arrays
add experimental meshcat implementation (3D only)
don't run plotting tests on apple
Bump version

[0.6.1] - 2020-12-31

Features

Assert non-empty pointlist in simplexgrid
3D Makie plotting interaction via keyboard
sliders would eat up screen real estate
middle mouse probably not available everywere
up/down for fine moving and pgup/pgdown for coarse seems to be ok
added title and status to 3d scene
New subplot handling working with PyPlot
Makie now running with multiscene
Fixed allocations in simplexgrid
Implementations (sometimes initial) for grid and grid,func in 1D, 2D, 3D
Support Makie, PyPlot, VTKView (VTKView without grid 1D)
At least temporarily drop support of Plots
Subplot handling: examples, docs
Remove dependency on Observables
Added grid writing
fixed initializaion bug in tokenstream
try to increase codecov
Don't use cleanup in tempname()
Fix definition of extrema
Try to increase coverage:

add PyPlot to test dependency, test pyplot plotting

Add project.toml for test
Try to set env for runtestes
Fix project.toml

[0.6.0] - 2020-12-24

Features

Trigger TagBot on issue_comment instead of cron: https://discourse.julialang.org/t/ann-required-updates-to-tagbot-yml/49249
Add 3D tensorgrid creation
Documentation overhaul, fixed simplexgrid bug

[0.5.8] - 2020-12-20

Features

Use codecov.yml instead of switching off codecov
Bugfix in adjacency
Add test for subgrid

[0.5.7] - 2020-12-14

Features

Lots of small fixes

[0.5.6] - 2020-12-12

Features

Use backlight for isosurfaces and planes.

Be sure to have https://github.com/JuliaPlots/GLMakie.jl/commit/05220480a3e79c254f538ba46a38d437598c874e in GLMakie >=1.19

Fix small glitches + version bump

[0.5.5] - 2020-12-12

Features

Figured out with how to have changing mesh and changing function at once, see

https://github.com/JuliaPlots/Makie.jl/issues/778#issuecomment-742397119

First reasonable 3D function plotting

[0.5.4] - 2020-12-09

Features

Refactor plotting
generic mesh visibility extraction for grid plot moved from makie to common
one loop for all materials.
First reasonable 3D Grid plots with PyPlot
Rotation kwargs (work only for pyplot)

[0.5.3] - 2020-12-07

Features

Rename ci
Added DOCUMENTER_KEY to TagBot.yml
Interactive Makie grid plot for 3D simplex grids
Remove coverage test from workflow for the time being

[0.5.2] - 2020-12-05

Features

Thank you travis and bye bye
Thank you travis and bye bye
removed .travis.yml

[0.5.1] - 2020-12-04

Features

Firsts steps to makie grid plotting

[0.5.0] - 2020-12-04

Features

Change edge plotting default to true
Relaxs type constraints for geomspace
First step to 3D grid visualization
Update readme & bump version

[0.4.2] - 2020-10-24

Features

Moved edge creation from VoronoiFVM

This currently creates a dependency on ExtendableSparse which should be replaced some time.

Don't print in show() methods!
Handle boundaries when creating bulk subgrid
Some fixes for pyplot in Pluto notebooks.

Don't call PyPlot.show() and PyPlot.pause(), as this must be handeled by the user.

Bfacemask! now allows to add new boundary facets in 2D
Fix show again
Fixing docs
V0.4.2
Fix compat

[0.4.1] - 2020-09-24

Features

Documentation fix

[0.4.0] - 2020-09-23

Features

Plotting of GridFactory showing input and output (PyPlot)
first steps of Makie plotting
Rebuild of plotting architecture
dispatching via plotter type
PlotterContext holds state of plot, allowing reuse or update (e.g. for Makie), see examples/plotlooptest.jl
First plots with Makie & WGLMakie
Introduce kwargs for plotting
Plotloop stuff
Fine tuned and commentes plotting stuff
Help mechanism for flags
Test for two figure arrangements in one plot -> future layout stuff
Fix travis
Switch to travis-ci.com
Moving GridFactory to SimplexGridFactory.SimplexGridBuilder